Biostrings r cran
Webdep: r-bioc-xvector (>= 0.19.7) BioConductor representation and manpulation of external sequences dep: r-bioc-zlibbioc (Virtual) zlibbioc Bioconductor package dep: r-cran-bitops GNU R package implementing bitwise operations sug: r-bioc-biocstyle standard styles for vignettes and other Bioconductor documents sug: r-bioc-genomicalignments WebDepends R (>= 3.1.0), Biostrings, ShortRead Imports methods, utils, IRanges, tidyr, tibble, dplyr, stringr, purrr, parallel Suggests STRaitRazoR biocViews Biostrings, ShortRead, IRanges RoxygenNote 6.0.1 NeedsCompilation no Repository CRAN Date/Publication 2024-07-02 08:30:06 UTC 1. 2 R topics documented:
Biostrings r cran
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WebFast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids … WebNov 8, 2024 · In the code snippet below, x can be a single string (character vector of length 1), a BString object or an RNAString object. DNAString (x="", start=1, nchar=NA) : Tries …
WebNov 8, 2024 · In Biostrings: Efficient manipulation of biological strings. Description Details The DNA alphabet Constructor-like functions and generics Accessor methods Display Author(s) See Also Examples. Description. A DNAString object allows efficient storage and manipulation of a long DNA sequence. Details. The DNAString class is a direct XString … WebSuggests Biostrings, GOSemSim, foreach, doParallel, RCurl, org.Hs.eg.db RoxygenNote 5.0.1 NeedsCompilation no Repository CRAN Date/Publication 2016-07-14 07:18:52 R topics documented: ... W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Pro-
WebJun 24, 2024 · hi, im new into R, im doing my first steps and i want to make an analysis of microbiome with phyloseq package, im working on ubuntu 20.04 LTS, with R version 4.2.0 (2024-04-22) -- "Vigorous Calisthenics" but when Im tr… WebAug 12, 2014 · 1 Please consult the documentation by running ?writeXStringSet. You write the file to your desktop (or whatever path you want) by setting out23a <- …
WebEfficient manipulation of biological strings. Bioconductor version: Release (3.16) Memory efficient string containers, string matching algorithms, and other utilities, for fast … Analyze and visualize Mutation Annotation Format (MAF) files from large scale …
WebOct 27, 2024 · Biostrings: Efficient manipulation of biological strings. Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of … sunshine daycare rochester nyWebrekado pushed a commit to branch master in repository guix. commit 3bc0667f3c5552d3574823025e7ebf011ab21060 Author: Ricardo Wurmus Date: Sat Jan 12 ... sunshine daycare preschool centerWebYes you can use the readDNAStringSet () function from the Biostrings package in R. To this command you can give the text file file containing the multiple sequences and … sunshine daycare winfield ksWebBiostrings (version 2.40.2) String objects representing biological sequences, and matching algorithms Description Memory efficient string containers, string matching algorithms, … sunshine daydream 4 seeds for saleWebNov 8, 2024 · Biostrings-internals: Biostrings internals; chartr: Replace letters in a sequence or set of sequences; detail: ... CRAN packages Bioconductor packages R-Forge packages GitHub packages. We want your feedback! Note that we can't provide technical support on individual packages. You should contact the package authors for that. sunshine daydream 4019Webrekado pushed a commit to branch master in repository guix. commit b719435ebb4a5e1aa3568107a22367f72ae398d6 Author: Ricardo Wurmus Date: Mon Nov 6 21 ... sunshine daydreamWebString objects representing biological sequences, and matching algorithms. Bioconductor version: 2.10. Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. Author: H. Pages, P. Aboyoun, R. Gentleman, and S. DebRoy. sunshine daydream 4